>Good news, my snp database seems to be in good form, and is ready for importing SNPs. For people who are interested, you can download the Vancouver Short Read Package from SVN, and find the relevant information in
There’s a schema for setting up the tables and indexes, as well as applications for running imports from maq SNP calls and running a SNP caller on any form of alignment supported by FindPeaks (maq, eland, etc…).
At this point, there are no documents on how to use the software, since that’s the plan for this afternoon, and I’m assuming everyone who uses this already has access to a postgresql database (aka, a simple ubuntu + psql setup.)
But, I’m ready to start getting feature requests, requests for new SNP formats and schema changes.
Anyone who’s interested in joining onto this project, I’m only a few hours away from having some neat toys to play with!